Mouse Pansci Reference Explorer

Cell Sets
      Expression Levels
      0 genes
      Scatterplot (UMAP)
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      Annotation Markers

      Main_cell_type
      LabelMarker
      Adipoce stem and progenitor cellsBmper, C7, Fbn1, Col6a5, Gas7, Slit3, Tnfaip6, Adamts12, Ebf2, Vit
      AdipocytesGhr, Tenm4, Acaca, Me1, Slc27a1, Fam13a, Acacb, Art3, Nrg4, Gm4876
      Alox15 positive cellsAlox15, Padi4, Tgfb2, Gm13986, Wnt2, Laptm5, Slpi, 4930455G09Rik, Gm4035, Gm29397
      Ascending thin limb of LOH cells4930407G08Rik, Tbpl2, Nr2e3, Slco4a1, Uncx, 1700016C15Rik, Angpt2, Wnt8b, D630014O11Rik, C330013F16Rik
      Asic2 positive cellsGm4804, Cpxm2, Sfrp5, Gm15404, Gjb2, Mfap5, Sept6, Fxyd6, Gm6614, Cldn1
      AstrocytesSlc1a2, Gfap, Slc6a11, Grm3, Arhgef4, Slco1c1, Gm13325, Myoc, Ntsr2, Gm13322
      Atrial cardiomyocytesNppa, Bmp10, Fgf12, Pam, Kcnj3, Ankrd1, Gm12381, Dkk3, Epha4, Myl4
      Basal cellsMsln, Ces1h, Tiam1, Ccl20, Ifitm10, Calcoco1, Plekhg1, Fmo6, Tbx1, Ces2f
      Bergmann gliaLuzp2, A2m, Actbl2, Gm5089, Nwd1, Gareml, Gm3764, Gm29521, Msx2, RP23-340C13.4
      Brown adipocytesGmpr, Kcnk3, Adra1a, Xrcc6, Col27a1, Dio2, Gm11769, Slc36a2, Gm10032, Ucp1
      Cacna1b positive cellsNgf, Gstp2, Ccbl1, Mug2, Lcn2, Serpina1b, Gpc3, 2310034O05Rik, Cyp2a5, 1700084C01Rik
      Cerebellum granule neuronsCopg2, Nefm, Nefh, Nefl, Gabra6, Cbln3, Cbln1, Barhl2, Gm12116, Zic2
      Cerebellum interneuronsSkor1, Bhlhe22, Ssxb5, Prdm8, Gm12198, Ccdc27, Trim67, Gm27199, Gm14204, Slc32a1
      Chief cellsGm12298, D930019O06Rik, Amy2a1, 4930509E16Rik, Mettl21b, CH25-241D1.1, Gm11963, Gm13420, Arntl2, Gm15889
      CholangiocytesTfpi2, E130309D02Rik, Gm830, Bend5, 1810008I18Rik, Slc45a3, Fam198a, 4930486I03Rik, Urah, Setd1a
      Choroid plexus epithelial cellsEnpp2, Htr2c, Trpm3, Ttr, Wdr17, Slc4a10, Gmnc, Otx2os1, Cngb3, Otx2
      Ciliated cellsScgb1a1, Sec14l3, Cdc20b, Cyp2f2, Lrrc23, Pbx1, Dnah6, Cbr2, Cep128, E030010N08Rik
      Circulating hepatoblastsCp, Cyp7b1, Egfr, Pzp, Cps1, Trf, Adk, Pid1, Cfh, Slc7a2
      Colec10 positive cellsNr1h5, Adamts13, Colec10, Gdf2, Lhx2, Colec11, Rbp1, Gm6277, RP23-331M15.1, Gm16113
      Colonic epithelial cellsSlc26a2, Tgm3, Car4, Saa1, Parm1, Ly6g, Bmp2, Fth1, Slc26a3, Ly6a
      Connecting tubule cellsTfcp2l1, Klk1, Npnt, Pkhd1, Aqp2, Cdkl1, Aqp3, Veph1, Myh10, Col4a4
      Cortical projection neurons 1Dcc, Il1rapl1, Npsr1, Ntrk2, E530001K10Rik, Cacna2d3, Gpc5, Gm27247, Lrp1b, Rasgrf1
      Cortical projection neurons 2Grm4, Thsd7b, Gm15338, Kcnip3, Dpp10, 3110035E14Rik, Sdk2, Olfr114, Sema5b, Srcin1
      Cortical projection neurons 3Zfp804b, Olfm3, Kctd16, Ntng2, Stk32c, Tmem178, Slc24a2, 1700023F02Rik, Bdnf, 6530402F18Rik
      Dentate gyrus neuronsRgs7, Sorcs3, Brinp1, Galnt14, Dlgap2, Baiap2, Bai1, Mapk4, Homer1, Lrfn5
      Descending thin limb of LOH cellsPark2, Slc4a11, Fst, Tbpl2, Bdh2, 4930407G08Rik, Lypd2, Trim60, Car14, RP24-393L8.1
      Distal convoluted tubule cellsSlc12a3, Wnk1, Abca13, Defb1, Klhl3, Sfrp1, Clcnkb, Ppp1r1a, Kctd1, Tsc22d1
      Endocardial endothelial cellsInhba, Rps6ka2, Sncaip, Emcn, Vcam1, Adh6b, Igf2, Rdx, Nos3, Slc26a10
      Endothelial cellsAtp13a5, Gm5127, Fbln5, Zic3, Ltbp4, RP24-287C2.1, Gm12868, Zic2, Nos3, Itm2a
      Enteric gliaRasgef1c, Gpr37l1, Tmprss5, Gm14267, Gm12688, Kank4, Adam11, Cmtm5, Lgi4, Kcna1
      Enteric neuronsFam155a, Fgf13, Cntnap2, Asic2, Kcnb2, Pcdh9, Sgcz, Lingo2, Kcnd2, Zfp804a
      Enteroendocrine cellsChgb, Nts, Gip, Chga, Mctp2, Asic5, Tph1, Pappa2, Rfx6, Gcg
      Ependymal cellsSspo, Tas2r113, RP24-400J22.2, Gm10714, 4930519F16Rik, RP23-300L15.1, Olfr1512, Vmn2r44, Olfr1511, RP24-461L18.2
      Epididymal cellsAkr1b7, Crisp1, Wdr25, 5430419D17Rik, Pax2, Rgs6, Plcb1, 1700112E06Rik, Fam129a, Ptgs2
      ErythroblastsSlc25a21, Specc1, Zdhhc14, Sptb, Prim2, Bcl11a, Ank1, Rhag, Hbb-bs, Pvt1
      Fcgbp positive cellsTrps1, Ptn, Stc2, Wnt5b, Cyp3a57, Fbn2, Sema4c, BC006965, Btn1a1, Mlph
      FibroblastsDmbt1, Cyp2c55, Car1, Col6a1, Slc37a2, Col6a2, Col6a4, Htr4, Col6a3, Col4a1
      Fibro–adipogenic progenitorsPrg4, Zfp385b, Scara3, Fndc1, Scara5, Nova1, Abca8a, Smoc2, Medag, Snrpa1
      Fut9 positive cellsMeg3, Tenm2, Lsamp, Fgf14, Ank2, Syt1, Tmem132d, Unc5c, Elavl2, Pde4b
      Gastric epithelial cellsAnk, Cemip, Gm94, Lipm, Aim1, Aadacl3, Aox4, Skint6, Tmprss11f, Pla2g4e
      Gastric mucous cellsRptn, RP23-227A12.3, Krt78, Gm15318, A4gnt, Prima1, Teddm3, Sfta2, Sox21, Cxcl17
      Goblet cellsFgfr2, Tmem56, Lct, Abcc2, Jarid2, Cyp3a25, Mme, Dab1, Gm22179, Klhl32
      Habenula neuronsNwd2, Kcnma1, Kctd8, Cdh10, Gm29478, Robo3, Olfr723, Gabbr2, Gpr139, Lrrc55
      Hepatic stellate cellsSerpina1e, Apoe, Serpina3k, Apoc1, Aox3, Fgb, Mup3, Apoa2, Gc, Hpx
      HepatocytesZfp395, Serpind1, Mup2, Gm20319, Gm29475, 1110008F13Rik, Mvd, Gm3839, Ikbkg, Ftcd
      Hindbrain neurons 1Lgi2, Vmn2r-ps9, Gm20058, Grm2, Gm14204, Scrg1, Vmn2r5, Gm20657, Gm26939, 1700109G14Rik
      Hindbrain neurons 2Vwc2l, Cdh23, Zmat4, Adamts2, Gm15645, Bcan, Cpne9, Il1rapl2, Crhr1, Lzts1
      Inferior olivary nucleus neuronsNrcam, Foxp2, Nell2, 2600014E21Rik, Rims4, Gm5974, Htr5b, Haglr, Gm23326, Gm15393
      Interbrain and midbrain neurons 1Lrrc7, Gabra4, Adarb1, Abhd12b, Tspear, Lrrn2, Kcnj9, Lhx9, Hrh3, Grin2b
      Interbrain and midbrain neurons 2Rora, Dok5, Grik2, Tph2, Calcr, Gabra5, Miat, Sorcs1, Fam135b, Zim1
      Interneurons 1Grip1, Gria1, Galntl6, Cntnap4, Nxph1, Cntnap5c, Pou6f2, Trhde, Lrrc4, Crhbp
      Interneurons 2Adarb2, Npas3, Dync1i1, Dlx6os1, Cplx2, Cntn4, Sobp, Nkain3, Neto1, 4930555F03Rik
      Interstitial cells of CajalBarx1, Spry4, Gm4131, Rem1, Armcx2, RP23-53H1.3, Fibin, Tnn, Gpr173, Dact3
      Intestinal epithelial cellsPcsk5, Clec2h, 2900026A02Rik, Malrd1, Epcam, Enpep, Myo1d, Mep1b, Cdhr2, Ace2, Krt20, Slc15a1, Ezr, Slc43a2, Xdh, Fabp2, AI747448, Magi1, Abcb1a, Nckap5, Gmds, Cubn, Rrbp1, Reg3b, Sepp1, Plb1, Enpp3, Clca6, Rnf213, Ddx60, mt-Co1, Ext1, Clca3, Atp2b1, Ahnak
      Juxtaglomerular cellsRen1, Ndst3, Cep112, Nkx3-1, Alx1, 1700066O22Rik, Gm16340, Hey2, Pcdh18, Nrip2
      Lgr5 positive cells3110099E03Rik, Mannr, Miox, Fam181b, Cyp1a1, Ssu2, Igdcc3, Slco4a1, RP23-212H4.3, Dhh
      Lymphatic endothelial cells4930435H24Rik, F8, Mmrn1, Neo1, Slc41a1, Flt4, Klhl4, Rnf220, Gm15581, Fam43a
      Lymphoid cellsIghm, Sox5, Klhl6, Dach2, Gm14005, Ezh2, BE692007, Arid5a, Satb1, Fam169b
      Lymphoid cells_B cellsCnot6l, Gm15987, Blnk, Dock10, Lipc, Bcl6, Insig2, St3gal1, Rrp1b, St8sia6
      Lymphoid cells_Cycling B cellsBach2, Parp8, Rhoh, Chrna9, Map4k1, Nuggc, Il21r, Mybl1, Dck, Mef2b
      Lymphoid cells_Plasma cellsIghg2b, Ighg1, Ighv9-3, Ighg3, Ighj4, Abcc4, Gclc, Dock2, Znrf3, Ighv3-6
      Lymphoid cells_Resting B cellsNlrc3, Gpr18, H2-Oa, Ccr6, Tnfrsf13c, H2-Eb2, Gm18342, Fcrl1, Cd79a, H2-Ob
      Lymphoid cells_T cellsThemis, 5830411N06Rik, Il2ra, Crtam, Il23r, Lef1, Il7r, Cd5, Icos, Tnfsf8
      Macula densa cellsSlc12a1, Erbb4, Fxyd2, Enox1, Sostdc1, Sec14l1, Casr, Gm16076, Col5a2, Pamr1
      Megf11 positive cellsGreb1l, Akr1b3, Clcnka, Bsnd, Folr1, Gm13075, Cldn19, Sim2, Lypd2, Ugt8a
      Mesothelial cellsAbcb1b, Caln1, Fn1, Adamtsl1, Mast4, Pkhd1l1, Kazn, Gpm6a, Has1, Upk3b
      Mfge8 positive cellsMfge8, Fcamr, Hpse2, Ccl21a, S1pr3, Dchs2, Edar, Cxcl13, Cr2, Stra6
      MicrogliaRP23-247J17.2, Crybb1, RP23-247J17.3, Ifi202b, AY512915, Trem2, Gpr34, Gal3st4, Gm26680, Tmem119
      Mirg positive cellsPhka1, Rian, B830012L14Rik, RP23-204I16.3, Mirg, Gm14261, Asb14, Mir1a-1, Mir341, Pfkfb3
      Muc2-producing goblet cellsOdf2l, Saysd1, Ptgdr, RP24-441N3.3, Pdx1, Gm26801, Gm12506, Grin1os, Rap1gapos, Lrrc26
      Muc5ac-producing goblet cellsCybrd1, Nqo1, 2210019I11Rik, Gm15816, Vstm2b, Gm13881, Syt8, Tcf23, Nkx6-3, 4930404N11Rik
      Muc6-producing goblet cellsGkn3, 2310057J18Rik, BC048546, Glp1r, Tff2, Wfdc18, Nkx6-2, Gm16120, Nkx6-3, Kctd14
      Mural cellsCar3, Mylk, Cald1, Flna, Lpl, Prkg1, Limch1, Macf1, Alcam, Sftpc
      Muscle satellite cellsPax7, Otoa, Gm26834, Megf10, Pdgfrl, Chodl, Rapsn, Myf5, Cdh15, Capn6
      Myelinating Schwann cellsMpz, Tenm3, Mylk4, Sptbn5, RP23-121N19.3, Gldn, Shc4, Ogn, Ncmap, B230206H07Rik
      Myeloid cellsItga6, Lims1, Med12l, Timd4, Cd226, Mmp9, Chst11, Gpnmb, Mir99ahg, Gnptab
      Myeloid cells_Alveolar macrophagesOlr1, Ncf1, Cxcl2, Fpr2, Clec7a, Cyb561a3, RP24-443M8.2, Abcg1, Clec4n, Fpr1
      Myeloid cells_BasophilsRasa3, Dhx40, Hgf, Arhgap10, Il6, Nrgn, Hdc, Nbeal2, Slc6a4, Pim1
      Myeloid cells_Dendritic cellsAldh1a2, Itgb8, Nr4a3, Slamf7, Col17a1, Wdfy4, Cd80, Il12b, Cd86, Cdk6
      Myeloid cells_Interstitial macrophagesSirpa, Stab1, Msr1, Ccr5, Nrros, Marco, Aoah, Sdc3, Apobec1, Mrc1
      Myeloid cells_Mast cellsCpa3, Mcpt1, Tpsb2, Mcpt2, Mcpt9, Olfr920, Mrgprb2, Cd200r3, Mrgprb1, Tpsab1
      Myeloid cells_MonocytesHc, Vcan, Fgr, Igsf6, Pot1b, RP23-349H13.2, Sirpb1c, Klra2, Treml4, Gpr141
      Myeloid cells_NeutrophilsIrg1, S100a9, Ncf2, Clec4d, Stfa2l1, R3hdm4, Trem1, A530064D06Rik, RP24-127D13.2, Retnlg
      Myotendinous junction myonucleiLama2, Ptprq, Adamts20, Pdlim3, Col22a1, Sim1, Hmgb1-ps8, Gadl1, Kbtbd12, Hephl1
      Ncam1 positive cellsGm8126, F3, Mir351, C430049B03Rik, Kcnh8, Gm28730, Gm7233, Hoxc4, Wnt16, G6pc2
      Neural cellsDct, Soat1, Gm12068, Mgll, Slc12a2, Fgl2, Tyr, Zbtb8a, Pax3, Nlrp5-ps
      Neuromuscular junction myonucleiPrkar1a, Fam19a4, Psd3, Xirp2, Clcn1, Musk, Col19a1, Colq, 2610203C22Rik, Nes
      Ngf positive cellsAngptl2, 2610028E06Rik, Thbs2, Pebp1, Mroh5, Gm20386, Fibin, Ackr4, Tcf21, Plagl1
      Non-myelinating Schwann cellsSpock1, Cdh19, Lrrc4c, Focad, Ptchd4, Pex5l, Cadm2, D7Ertd715e, Col28a1, Dscam
      OB neurons 1Gm29260, Gm11404, Frmd7, Sp8, Dlx6os2, Sp9, 2900079G21Rik, Grm2, Npffr2, Igfbpl1
      OB neurons 2Htr1f, Sp8, Trh, Frmd7, Gad2, Sp9, Dlx1, Dlx6, Igfbpl1, Npffr2
      OB neurons 3Ptprd, Kirrel3, Car10, Reln, Grm8, Nav2, Gabrb1, Fam184a, Kcnh7, Cacnb4
      Oligodendrocyte progenitor cellsGpr17, Neu4, Zfp488, Olig2, A930009A15Rik, Olig1, Rlbp1, S100a2, AI854517, B9d1os
      OligodendrocytesPlp1, Mobp, Prr5l, Cdh20, Mag, Nfasc, Opalin, Ermn, Gm12324, Hapln2
      OsteoblastsCsmd1, Olfr394, Gm16000, Vmn1r-ps47, Mir694, RP23-456B9.23, Cyp1b1, Vmn2r97, Gm12111, Elane
      Pancreatic acinar cellsCela1, Pnliprp1, Cel, Cela2a, Cpa2, Cpb1, Pnlip, Cpa1, Galnt6os, Rbpjl
      Paneth cellsMmp7, Lyz1, Pla2g2a, Itln1, Defa-ps7, Defa-ps4, Mptx2, Gm7861, Gm27162, Gm21498
      Parietal cellsAtp4a, Gm15564, Pla2g1b, Chia1, Tff1, Gkn1, Muc5ac, Gif, Dpcr1, Furin
      Pde4c positive cellsGm4131, Nkx3-2, Hand1, Tmem200c, RP23-373D16.3, Pde4c, Slc27a6, RP23-291L24.4, Gm26070, Mab21l2
      Pituitary cellsPomc, Gh, Prl, 4930544I03Rik, Cga, Fshb, Oacyl, Gnrhr, Gm14618, Pou1f1
      PodocytesMagi2, Podxl, Nphs2, Srgap1, Ptpro, Nphs1, Sema3g, Rhpn1, Wt1os, Gm9946
      Principal cellsMuc20, Klhl14, Ptplad2, Bcam, Muc1, D630044L22Rik, Sesn3, Gstm2, Sbspon, A930017K11Rik
      Proximal tubule cellsFgf1, Gcnt1, Fut9, Keg1, Lrp2, Slc7a13, Slc6a18, Gm20400, Slc6a15, Sugct
      Pulmonary neuroendocrine cellsRad51b, Piezo2, Gm12474, Tnfaip2, Colgalt2, Ascl1, Thbs1, Mettl11b, Tcerg1l, Samd1
      Purkinje neuronsGrid2, Anks1b, Itpr1, Cntnap5b, Rgs8, Aldoc, Kcnab1, Arhgef33, Atp1a3, Slc1a6
      Rdh16 positive cellsDcdc2a, Dnah14, Spag16, Gpr64, Agbl4, Ctnna3, Esr1, Macrod2, Spata16, Nasp
      Secretory cellsAox1, Bpifa1, 2010007H06Rik, Megf6, Muc5b, Scgb3a1, Gm29455, RP23-227A12.5, Neil2, Gabrp
      Sis positive cellsNek10, Slc46a1, Gm16054, Pdx1, Hes2, Ltb4r2, Gm15816, Krt12, Otop3, Sphk2
      Skeletal muscle cellsMyh1, Myh8, Rbfox3, Mrvi1, Rxfp1, Mical3, Tnnc2, Ror2, Mb, Tnnt3
      Striatal neurons 1Pde7b, Gpr88, Pde1b, Drd2, C030005K15Rik, Drd1a, Gpr6, Epyc, Krt9, Gm10754
      Striatal neurons 2Mir187, Gm13112, Sox1, Gm12665, Prok2, Gm5607, Gm10421, Gm15740, Npy5r, Drd3
      TenocytesCol1a1, Col2a1, Col1a2, Sparc, Col11a1, Ibsp, Comp, Col24a1, Chad, Ust
      Thick ascending limb of LOH cellsEgf, Tmem207, Top3b, Cldn16, Gpx6, Gm14002, Gm17225, Tarm1, Nccrp1, 4930461G14Rik
      Tuft cellsDclk1, Ptbp2, Reg1, St18, Hck, Gnat3, Prap1, Trpm5, Rgs13, Ccnj
      Type A intercalated cellsOxgr1, 1700028J19Rik, Gm9871, RP24-79E2.3, Tmem61, 1700009J07Rik, 4930563D23Rik, 2410003L11Rik, Rhbg, 2610016A17Rik
      Type B intercalated cellsCar12, Slc26a4, Slc4a9, Gm12121, Insrr, C630028M04Rik, Zcchc16, Hmx2, Atp6v1g3, Gm16353
      Type I alveolar epithelial cells4930522O17Rik, Pitpnm3, Bik, Gm15809, 2310007B03Rik, Thnsl1, Sorbs3, Wnt3a, Gm16212, Rps14
      Type I myonucleiTpm3, Gm10801, Mybpc1, Gm10800, Igfn1, Obscn, Actn2, Frmd4b, Dkk2, Amotl1
      Type II alveolar epithelial cellsC77370, Malt1, Cxcl15, Fam150a, Rmdn2, Gm28856, RP23-23C9.1, RP23-436F15.6, Gm18595, C87198
      Type II myonucleiGm26740, Atp2a1, Agbl1, Fbxo32, Ckm, Pdzrn3, Ampd1, Eya4, Mypn, Tbx15
      Unipolar brush cellsGlra2, 9330154J02Rik, RP23-340C13.5, 1700109G14Rik, Gm28652, Cbln1, En2, Gm5089, Gm6030, Gm27008
      Urothelial cellsE230016M11Rik, Snx31, Krt15, Padi1, Gm13219, Upk1a, Olfr890, Phlda3, Upk2, Nipal4
      Vascular endothelial cellsCacna1c, Airn, Tnnt2, Sorbs2, Rbm20, Ryr2, Mybpc3, Ppm1e, Myom2, Pln
      Vascular endothelial cells_AerocytesGm13816, Gm17158, RP24-74O18.3, Pink1, Gipc3, Gm10287, Gm16564, Zfp697, Prrt4, Begain
      Vascular endothelial cells_General capillary cellsFcgr2b, Plat, Ackr3, Ecscr, Gm20631, Adcy4, Ankrd63, RP23-462P13.1, Fam71f2, Tmem44
      Vascular leptomeningeal cellsPtgds, Fndc3c1, Gm6425, Gm17043, Alx3, 2310005E17Rik, Gm12829, Lama1, Gm29521, RP23-340C13.5
      Ventricular cardiomyocytesDmd, Cacna1d, Grm1, Zfpm2, D830032E09Rik, Cdh2, Tmtc1, Tlr4, Esrrb, 0610040F04Rik