Label | Markers |
---|
aDC1 | GPR153, GPR157, CD1E, TNNT2, LAD1, HSD11B1-AS1, G0S2, NEURL3, NRP2, LAMP3 |
aDC2 | PRDM16, S100A2, LAD1, LAMP3, FABP4, BX255923.2, MYOZ1, C11orf96, NRXN2, SLC6A12 |
aDC3 | LAD1, LAMP3, FSCN1, AOC1, IDO1, CCL19, RASSF4, LGALS2, TMEM176A, TIFAB |
Basal cells | SFN, GJB5, GBP6, S100A2, S100A16, S100A14, MIR205HG, MAB21L4, ADH7, PITX1 |
C1Q HLA macrophages | TNFRSF9, C1QA, C1QC, C1QB, C1orf54, LMNA, SLAMF8, FCER1G, FCGR3A, OLFML2B |
CD14+CD55+ FDC | ANKRD65, VWA1, RNF207, TNFRSF9, PDPN, EPHB2, GJB3, GJA4, DNALI1, CYP4B1 |
CD16-CD56- NK | CD160, FCER1G, FCGR3A, SH2D1B, XCL2, XCL1, FASLG, GNLY, IL18RAP, EOMES |
CD16-CD56+ NK | FCER1G, SH2D1B, XCL2, XCL1, LINC00299, ID2, GNLY, IL18RAP, SPTSSB, GZMK |
CD16+CD56- NK | FCRL6, FCGR3A, SH2D1B, GNLY, IL18RAP, CXCR2, CXCR1, CX3CR1, FGFBP2, GZMA |
CD56+ gd T | ZNF683, FCRL6, XCL2, XCL1, LINC01871, GNLY, CD8A, ITGA1, PPP2R2B, TRGC2 |
CD8 Tf | TNFRSF9, RGS4, XCL2, XCL1, FASLG, CD8A, AGAP1, LINC02084, EOMES, LINC01967 |
CM CD8 T | CD2, CD8A, CD8B, GPR171, IL7R, ITGA1, GZMK, GZMA, SAMD3, GIMAP7 |
CM Pre-non-Tfh | TNFRSF4, TNFRSF25, DHRS3, RCAN3, LDLRAP1, MAN1C1, EPB41, LCK, PATJ, AK5 |
CM PreTfh | RCAN3, LDLRAP1, MAN1C1, EPB41, JUN, NFIA, PATJ, SYDE2, LRRC8C, DPYD |
Crypt | FHAD1, IGSF21, TMEM54, GJB4, GJB3, CYP4X1, TACSTD2, GNG12, ARHGAP29, PALMD |
csMBC | CNR2, SMAP2, PATJ, PDE4B, ST6GALNAC3, LINC01781, DRAM2, SLC22A15, NOTCH2, TXNIP |
csMBC FCRL4+ | KIF1B, TNFRSF1B, EFHD2, RUNX3, SH3BGRL3, CD52, FGR, THEMIS2, PTAFR, S100PBP |
CXCR6+ RM CD8 T | CD2, CD160, PYHIN1, FCRL6, SLAMF7, CD244, XCL2, FASLG, LGR6, LINC01871 |
Cycling | C1QA, C1QC, C1QB, PLA2G7, IL22RA2, SERPINA1, MMP9, DAB2, MS4A6A, CD300LF |
cycling FDC | WLS, VCAM1, S100A1, DDR2, PRRX1, FCAMR, LAMB3, G0S2, VIT, EPAS1 |
cycling T | HES4, TNFRSF18, TNFRSF4, TNFRSF25, TNFRSF1B, UBXN10-AS1, STMN1, LCK, CLSPN, HEYL |
DC recruiters CD8 T | CD160, FCRL6, CD244, XCL2, XCL1, LINC01871, GNLY, CD8A, CD8B, LINC02084 |
DC1 mature | MYCL, TACSTD2, NEGR1, LINC01750, PPM1J, LINC01356, LINC01357, TSPAN2, C1orf54, SHE |
DC1 precursor | LINC01750, C1orf54, RAB7B, BATF3, XCR1, RAB32, CPVL, IDO1, SHTN1, CLEC9A |
DC2 | TMEM51, TRNP1, FGR, CSF3R, FHL3, MYCL, ELAVL4, CTTNBP2NL, CD101, ADAMTSL4 |
DC3 | MYCL, MTMR11, S100A12, CD1E, FCER1A, RGS18, IL1B, MARCO, CAVIN2, CX3CR1 |
DC4 | TMEM51, CSF3R, MYCL, ETV3L, SLAMF8, FCGR3A, RGS18, NID1, MARCO, P2RY13 |
DC5 | CSF3R, MYCL, ATP1A2, FCER1G, RGS18, SLC8A1, IL1B, SCN9A, SLC4A3, SH3BP4 |
DN | MIR4422HG, S100A6, SLAMF7, CD247, FASLG, IL19, LYST, LINC01833, LCT, CD28 |
DZ FDC | LINC02593, ANKRD65, MMP23B, RNF207, TNFRSF9, COL16A1, CSF3R, PTPRF, CYP4B1, CYP4X1 |
DZ migratory PC precursor | LINC01333, LINC02362, LINC02523, LRRC52-AS1, MBL2, LINC01484, SDC1, LINC01717, DERL3, FNDC3B |
DZ_G2M_CCNBHigh | INTS11, AURKAIP1, NADK, GNB1, CEP104, CAMTA1, SLC2A5, SLC25A33, PIK3CD, CLSTN1 |
DZ_G2M_HistoneHigh | INTS11, AURKAIP1, CDK11B, NADK, GNB1, CAMTA1, SLC2A5, CLSTN1, CTNNBIP1, LZIC |
DZ_Sphase | INTS11, CPTP, AURKAIP1, MRPL20, NADK, GNB1, ICMT, PHF13, THAP3, CAMTA1 |
DZ_Sphase_HistoneHigh | UBE2J2, PUSL1, INTS11, AURKAIP1, ATAD3A, CDK11B, NADK, GNB1, RER1, TP73 |
DZ-cell cycle exit | STMN1, HMGN2, CDC20, NUF2, ASPM, CENPF, CENPE, HMGB2, CCNB1, PTTG1 |
DZ-nonproliferative | STMN1, HMGN2, ATP5IF1, LSM10, PRDX1, LAMTOR5, ANP32E, S100A10, MPC2, ARPC5 |
DZ-nonproliferative_FOXP1hi | CPTP, TAS1R3, NOL9, TAS1R1, THAP3, SLC2A5, FUCA1, CLIC4, SYF2, STMN1 |
DZ/LZ | LINC01134, SLC2A5, SPEN, CAPZB, CLIC4, SYF2, EYA3, PTAFR, ATP5IF1, LAPTM5 |
Early GC-commited MYC+ | DUSP2, RASGEF1B, EGR1, CD74, PHACTR1, CD83, HLA-DRA, HLA-DRB5, HLA-DRB1, HLA-DQA1 |
Early PC precursor | FRZB, SPARCL1, LINC01484, PPP1R17, TMEM52B, ETV7, PRDM1, RASSF6, FMNL2, NKX6-3 |
Eff-Tregs | HES4, TNFRSF18, TNFRSF4, TNFRSF25, TNFRSF1B, LCK, GBP2, GBP5, CSF1, CD2 |
epithelial_multiome | RNF223, ARHGEF16, ERRFI1, MIR34AHG, KAZN, TMEM51-AS1, TMEM51, EPHA2, PADI1, PADI3 |
FCRL5+ MBC | FCRL5, KYNU, CCR1, HOPX, HLA-DPB1, DNAH8, KCNMA1, MS4A1, BHLHE41, SSPN |
FDC_multiome | PRDM16, GPR153, PDPN, ARHGEF10L, PLA2G2A, EPHB2, CYP4B1, CYP4X1, GLIS1, GNG12 |
FDCSP epithelium | PLA2G2F, SFN, PDZK1IP1, SPRR1B, SPRR2D, SPRR2F, S100A12, S100A16, S100A14, IL36G |
FRC | CD164L2, CYP4X1, ARHGAP29, MIR205HG, LINC01139, MAB21L4, LINC02009, MAGI1-IT1, C6orf141, IFNE |
GC-commited metabolic activation | ENO1, SRM, MRTO4, YBX1, EBNA1BP2, PRDX1, SERBP1, CCT3, GPATCH4, STUM |
GC-commited MIR155HG- | FCRL5, PARP14, PHACTR1, CD83, HLA-DRA, HLA-DRB1, HLA-DQA1, HLA-DQB1, CD72, BIRC3 |
GC-commited MIR155HG+ | MFSD2A, HIVEP3, FCRL5, SLAMF1, REL, DUSP2, ARHGAP31, PARP14, TFRC, NFKB1 |
GC-Tf-regs | PYHIN1, CD247, F5, TLR5, SUSD4, CHRM3-AS2, AAK1, MAL, CHN1, PLCL1 |
GC-Tfh-0X40 | TNFRSF18, TNFRSF4, TNFRSF25, PLK3, GBP2, KIAA1324, IGSF3, CD2, PYHIN1, RGS4 |
GC-Tfh-SAP | TNFRSF18, TNFRSF4, PRKCZ, TNFRSF25, TNFRSF1B, CAMK2N1, ID3, SH3BGRL3, LCK, KIAA0319L |
IFN1+ PDC | EPHA2, LINC01226, MYCL, TTC39A, FCER1A, FCER1G, LINC01724, SLC35F3, PROC, SCN9A |
IgD PC precursor | SLC6A9, SLAMF7, SDC1, FRZB, CHPF, GMPPB, LINC00698, SYNPR, PDIA5, FNDC3B |
IgG+ PC precursor | SDF4, PIK3CD-AS2, SRM, C1orf167, PINK1, DDOST, PDIK1L, CNKSR1, THEMIS2, SMPDL3B |
IgM+ early PC precursor | OR4M2, LGALS16, LINC02437, VPREB1, LINC01965, CFAP54, RASSF6, LINC01484, OR1B1, PRDM1 |
IgM+ PC precursor | CHPF, CHDH, IL17RB, LINC02362, LINC01484, LINC01485, PRDM1, CREB3L2, CTHRC1, ADM |
IL7R DC | TMEM51, FHAD1, ELAVL4, CD1E, FCER1A, RGS18, CD207, IL1RN, CALCRL, SLC4A3 |
IL7R MMP12 macrophages | VWA1, GPR153, TNFRSF9, MIR34AHG, TMEM51-AS1, TMEM51, FHAD1, ATP13A2, ARHGEF10L, HTR6 |
ILC1 | TTLL10, FCER1G, SH2D1B, XCL2, XCL1, LINC00299, GNLY, NMUR1, KIT, TRGC1 |
ITGAX ZEB2 macrophages | TNFRSF9, MIR34AHG, TMEM51-AS1, PLA2G2D, RAB42, SDC3, CSF3R, PTPRF, SYPL2, SHE |
Light Zone GCBC | DMRTA2, PATE1, NPY1R, DDX53, NKD2, TEX13D, NXPH3, ERC2-IT1, LINC00345, HTRA3 |
LZ | EYA3, MARCKSL1, MFSD2A, HIVEP3, PRDX1, MCOLN2, MTF2, BCAR3, NTNG1, VAV3-AS1 |
LZ FDC | VWA1, TNFRSF9, PDPN, GJB3, GJA4, CITED4, FAM151A, GNG12, WLS, CNN3 |
LZ-BCL2A1 neg | CCDC28B, MARCKSL1, PRDX1, SEMA4A, FCRL3, PRDX6, RGS13, BPNT1, H3F3A, PARP1 |
LZ-DZ-re-entry early commitment | NOC2L, MRPL20, PARK7, ENO1, SRM, MRTO4, ZNF593, CCDC28B, MARCKSL1, MFSD2A |
LZ-proliferative_BCL2A1neg | LINC01128, NOC2L, ISG15, SDF4, UBE2J2, PUSL1, INTS11, AURKAIP1, CCNL2, MRPL20-AS1 |
LZ-proliferative_BCL2A1pos | NOC2L, PUSL1, INTS11, AURKAIP1, MRPL20, ATAD3B, ATAD3A, CDK11B, NADK, TP73 |
M1 Macrophages | RBP7, TMEM51, ARHGEF10L, CDA, CSF3R, FCGR1B, FCGR1A, MTMR11, S100A12, ETV3L |
MAIT | IL23R, FASLG, LINC01871, GNLY, IL18RAP, SLC4A10, DPP4, EOMES, CXCR6, GPR171 |
Mast cells | UTS2, KLHDC7A, TAL1, TCTEX1D1, NTRK1, PBX1, PTGS2, SLC45A3, GCSAML, CNRIP1 |
Mature IgA+ PC | SMPDL3B, TENT5C, SLAMF7, LINC00582, SDC1, CHPF, ITM2C, MANF, TMEM45A, FNDC3B |
Mature IgG+ PC | SMPDL3B, AMPD1, TENT5C, SLAMF7, LINC00582, SDC1, CHPF, ITM2C, TMEM45A, FNDC3B |
Mature IgM+ PC | CHPF, LINC02362, DERL3, FKBP11, SDC1, SLAMF7, DNAJB9, IGLV6-57, XBP1, CKAP4 |
MBC derived IgA+ PC | COL24A1, MAGI3, TENT5C, LMNA, SLAMF7, SDC1, PDK1, CASP10, CHPF, NYAP2 |
MBC derived IgG+ PC | PLEKHN1, SMPDL3B, TLCD4, AMPD1, TENT5C, SLAMF7, RGS1, LINC00582, SDC1, PAIP2B |
MBC derived PC precursor | SLAMF7, SDC1, FNDC3B, GAB1, LINC02362, ELL2, LINC02836, PRDM1, CADPS2, DGKI |
MBC-like_FCRL4+ | RUNX3, STMN1, FGR, THEMIS2, CLSPN, CDCA8, CDC20, KIF2C, STIL, DEPDC1 |
MBC-like_nonproli | MARCKSL1, SEMA4A, FCRL3, RGS13, CCDC88A, RFTN1, KLHL6, BASP1, ZNF608, HLA-DMB |
MBC-like_proli1 | STMN1, HMGB2, TUBA1B, HMGB1, HMGN2, H2AFZ, TUBB, PCLAF, PTMA, NUSAP1 |
MBC-like_proli2 | STMN1, CLSPN, ASPM, DTL, RRM2, MCM6, SPC25, POLQ, SMC4, NCAPG |
MBC-like_proli3 | ATAD3A, PGD, CENPS, SRM, TNFRSF8, MRTO4, RCC1, CLSPN, CTPS1, EBNA1BP2 |
Monocytes | RBP7, CDA, FGR, CSF3R, FCGR1B, FCGR1A, MTMR11, S100A9, S100A12, S100A8 |
MRC | MXRA8, RNF207, COL16A1, RSPO1, PODN, SGIP1, PTGER3, LHX8, PTGFR, ADGRL2 |
myeloid_multiome | PRDM16, GPR157, TMEM51-AS1, TMEM51, FHAD1, PADI2, ARHGEF10L, FGR, PHC2, CSF3R |
Naive | TNFRSF25, DHRS3, UBXN10-AS1, TCEA3, MDS2, RCAN3, LDLRAP1, MAN1C1, EPB41, LCK |
Naive CD8 T | CA6, RCAN3, LDLRAP1, MAN1C1, LCK, AK5, AMIGO1, DENND2D, CD2, REG4 |
NBC CD229+ | LINC01857, CHL1, PARP15, ADAMTS6, CRIP3, OAS1, KLK4, LILRA4, FCMR, MS4A1 |
NBC first step activation | CD52, MACF1, S1PR1, C1orf162, TXNIP, CTSS, FCRL5, FCRL1, SELL, RALGPS2 |
NBC IFN-activated | ISG15, IFI44L, IFI44, RSAD2, EIF2AK2, STAT1, PARP14, HERC5, SAMD9L, LY6E |
NBC main | CD52, BEND5, S1PR1, CHI3L2, C1orf162, TXNIP, PLEKHO1, CTSS, FCRL1, RCSD1 |
NBC S100A+ | S100A9, S100A8, IGKC, CSTA, FDCSP, HLA-DRA, HLA-DPA1, HLA-DPB1, BTG1, IGHG3 |
NBC/OA first step activation | RERE, EIF4G3, CNR2, SMAP2, PDE4B, ST6GALNAC3, DPYD, VAV3, VAV3-AS1, LINC02785 |
ncsMBC | CNR2, SHISAL2A, L1TD1, ROR1, PDE4B, FNBP1L, S1PR1, DRAM2, CEPT1, C1orf162 |
ncsMBC FCRL4+ | TNFRSF1B, RUNX3, SH3BGRL3, CD52, SYTL1, FGR, THEMIS2, PDE4B, IFI44L, GBP4 |
Neutrophil Granulocytes | CDA, CSF3R, S100A9, S100A12, S100A8, FCER1G, FCGR2A, FCGR3A, FCGR3B, GLUL |
NKp44- ILC3 | SGIP1, LINGO4, RORC, U91324.1, MEIS1-AS2, IL17RE, KIT, PRL, KCNK17, MDFI |
NKp44+ ILC3 | TNFRSF18, C1orf141, IL23R, LINGO4, RORC, FCER1G, SH2D1B, XCL2, XCL1, LINC00298 |
Nksig CD8 T | FCGR3A, GNLY, CX3CR1, FGFBP2, GZMA, GZMH, GZMB, ADGRG1, CCL5, S1PR5 |
non-GC-Tf-regs | TNFRSF18, TNFRSF4, UTS2, TNFRSF9, TNFRSF1B, GBP2, GBP5, CD2, S100A4, PYHIN1 |
Outer surface | RNF223, PLA2G2F, TENT5B, PDZK1IP1, ANXA9, CRNN, CRCT1, LCE3E, LCE3D, LCE3A |
PB | E2F2, CLSPN, CDCA8, CDC20, KIF2C, CCDC163, STIL, DEPDC1, TENT5C, KCNN3 |
PB committed early PC precursor | DIRAS2, CFAP54, CCR10, VDR, PRDM1, SPARCL1, CRISP2, LINC01484, CKAP4, CD9 |
PC committed Light Zone GCBC | LINC01831, FRZB, OLR1, TMEM52B, SPARCL1, TAS2R39, LINC01484, RASSF6, PRDM1, IGLV2-34 |
PC-precursors | MARCKSL1, PRDX1, KCNN3, SEMA4A, RGS13, GPR137B, CCDC88A, SPRED2, FMNL2, DHRS9 |
PDC | MMP23B, AJAP1, EPHA2, ATP13A2, PAFAH2, LINC01226, AZIN2, MYCL, RIMS3, TTC39A |
PDC_multiome | AJAP1, EPHA2, LINC01226, AZIN2, NEGR1, COL24A1, SORT1, FLG-AS1, FCER1G, BX284613.2 |
preB | PCSK9, SPTA1, ARPP21, HHIP-AS1, AKAP12, ENTPD8, DNTT, IGF2, RAG1, RAG2 |
preGC_1 | YBX1, PRDX1, PTMA, NPM1, HSP90AB1, MIF, FABP5, NME2, NCL, BCL2A1 |
preMature IgG+ PC | CNKSR1, SMPDL3B, HYI, TENT5C, SLAMF7, UAP1, H3F3A, PDIA6, SDC1, QPCT |
preMature IgM+ PC | CHPF, RBM47, LINC02362, ELL2, LINC01484, PRDM1, CREB3L2, FKBP11, CFAP54, CKAP4 |
preT | LINC01226, CD1B, CD1E, ARPP21, UGT3A2, PTCRA, ELOVL4, DNTT, RAG1, RAG2 |
RM CD8 T | CD2, CD160, PYHIN1, FCRL6, SLAMF7, XCL2, LGR6, CD8A, CD8B, LINC02084 |
SCM CD8 T | CA6, MAN1C1, CD8A, CD8B, STAT4, TAFA1, TXK, LEF1, LEF1-AS1, IL7R |
SELENOP FUCA1 PTGDS macrophages | PLA2G2D, C1QA, C1QC, C1QB, FUCA1, RAB42, SDC3, FABP3, C1orf54, SLAMF8 |
Short lived IgM+ PC | SLAMF7, CHPF, SAMD7, WFS1, LARP1B, LINC02362, ELL2, LINC01484, LINC01485, TXNDC5 |
Surface epithelium | RNF223, ARHGEF16, ERRFI1, KAZN, EPHA2, PADI1, PADI3, ARHGEF10L, PLA2G2F, CAMK2N1 |
T-Eff-Mem | TNFRSF4, TNFRSF25, UBXN10-AS1, MAN1C1, GBP2, GBP5, CD2, S100A4, IL6R, PBXIP1 |
T-helper | HES4, TNFRSF18, TNFRSF4, TNFRSF25, TNFRSF1B, IL23R, GBP2, GBP5, CSF1, CD2 |
T-Trans-Mem | TNFRSF25, IL23R, CD2, S100A4, PBXIP1, CD247, B3GALT2, ATP2B4, CHRM3-AS2, LINC01871 |
TCRVδ+ gd T | ZNF683, FCRL6, CD244, XCL2, XCL1, DYSF, GNLY, CD8A, GPR171, ITGA1 |
Tfh T:B border | NFIA, ADGRL4, LRRC8D, CD2, IL6R, PYHIN1, CD84, NOS1AP, CD247, PTPRC |
Tfh-LZ-GC | TNFRSF4, TNFRSF25, SELENON, EPB41, LCK, HEYL, NFIA, GBP2, KIAA1324, DENND2D |
Tfh-Mem | TNFRSF18, TNFRSF4, TNFRSF1B, LCK, PIK3R3, NFIA, GBP2, KIAA1324, CSF1, CD2 |
unknown | CCN1, SELE, PRRX1, LAMC2, NFASC, PLOD2, PDLIM3, SLC22A3, MAGI2-AS3, FAM189A2 |
VEGFA+ | RNF207, ERRFI1, EPHA2, PLA2G2F, SFN, COL16A1, PTPRF, CYP4B1, CYP4X1, TACSTD2 |
GC LZ Noproli | LINC00550, KRT31, ASB10, FAM240B, BCL2A1, EBI3, FABP5, HSP90AB1, DUSP2, NME1 |
IFN CD8 T | IFIT1, GZMK, OASL, NKG7, USP18, GZMA, CCL5, IFI44L, CD8A, GZMH |
Early MBC | IGHD, SMIM14, CR2, HLA-DPB1, BANK1, CD52, HTR3A, CD1C, IGHM, NEIL1 |
Dark Zone GCBC | LHFPL3-AS1, WSPAR, IGHV3OR15-7, LINC02053, LINC00706, CPNE6, B4GALNT1, RSPO2, EPHA10, GDF5 |
Proliferative NBC | IGHM, IGHD, HMGB2, HLA-DRA, HLA-DPA1, STMN1, HLA-DPB1, CD52, TUBA1B, FTH1 |
Transitional PB | POU6F2-AS1, PRRX2-AS1, LINC01039, CKAP4, LINC00840, HYOU1, FKBP11, GMPPB, FOXE3, PRDM1 |
class switch MBC | LINC01428, L34079.3, KLK15, AMPD1, OR1Q1, LINC02768, PIWIL3, FBXO36-IT1, LINC01273, SLC5A12 |
MBC derived early PC precursor | DERL3, FKBP11, DAOA-AS1, XBP1, MZB1, PRDX4, SSR4, IGHG3, SPAG4, ITM2C |
preGC_2 | FAU, TMSB4X, RACK1, MARCKSL1, HLA-DRA, HLA-DPB1, CD52, FEZF1, ARPC3, EEF1A1 |
GC DZ Noproli | IGHM, CD79B, CD37, INSL5, NCF1, NEIL1, MS4A1, TCL1A, IGHD, CD52 |