Human Lung v2 (HLCA) Reference Explorer

Cell Sets
      Expression Levels
      0 genes
      Scatterplot (UMAP)
      0 cells

      Annotation Markers

      ann_level_1
      LabelMarkers
      ImmuneLCP1, CD53, PTPRC, COTL1, CXCR4, GMFG, FCER1G, LAPTM5, SRGN, CD52
      EpithelialKRT7, PIGR, ELF3, CYB5A, KRT8, KRT19, TACSTD2, MUC1, S100A14, CXCL17
      EndothelialPTRF, CLDN5, AQP1, PECAM1, NPDC1, VWF, GNG11, RAMP2, IGFBP7, CLEC14A
      StromaTPM2, DCN, MGP, SPARC, CALD1, LUM, TAGLN, IGFBP7, COL1A2, C1S
      ann_level_2
      LabelMarkers
      MyeloidSPI1, LGALS1, COTL1, MS4A6A, SRGN, TYROBP, LYZ, FCER1G, LAPTM5, AIF1
      LymphoidCD2, GZMA, CD7, CORO1A, IL32, NKG7, CD69, CXCR4, CD3D, CCL5
      Alveolar epitheliumS100A14, CXCL17, SEPP1, NAPSA, SFTPD, PEBP4, SLC34A2, CYB5A, SFTA2, SFTA3
      Airway epitheliumPERP, IGFBP2, TSPAN1, KIF21A, ELF3, KRT8, KRT19, TACSTD2, GSTA1, CYP4B1
      Blood vesselsPTRF, CLDN5, AQP1, PECAM1, NPDC1, VWF, RAMP3, RAMP2, SPARCL1, CLEC14A
      Fibroblast lineageBGN, DCN, MGP, SPARC, CALD1, LUM, COL6A1, IGFBP7, COL1A2, C1S
      Smooth muscleDES, SOD3, MYL9, ACTA2, MGP, CALD1, TPM1, TAGLN, IGFBP7, TPM2
      Submucosal GlandCCL28, PIP, ZG16B, PIGR, SEC11C, MARCKSL1, SELM, LTF, TCN1, AZGP1
      Lymphatic ECPPFIBP1, GNG11, RAMP2, CCL21, MMRN1, IGFBP7, SDPR, TM4SF1, CLDN5, ECSCR
      MesotheliumCEBPD, LINC01133, MRPL33, UPK3B, CFB, SEPP1, EID1, HP, CUX1, MRPS21
      ann_level_3
      LabelMarkers
      MacrophagesC1QB, C1QA, HLA-DRB1, AIF1, LYZ, CTSZ, CTSL, FCER1G, C1QC, LAPTM5
      Innate lymphoid cell NKGZMA, CD7, CCL4, CST7, NKG7, GNLY, CTSW, CCL5, GZMB, PRF1
      AT2NAPSA, SFTPD, PEBP4, SLC39A8, SLC34A2, CYB5A, MUC1, S100A14, SFTA2, SFTA3
      BasalKRT15, SFN, IGFBP2, SERPINF1, ADIRF, MT1X, BCAM, KRT5, KRT17, S100A2
      EC venousVWF, MGP, RAMP3, GNG11, RAMP2, SPARCL1, IGFBP7, CLEC14A, ACKR1, PECAM1
      T cell lineageCD69, CORO1A, CXCR4, CD3E, TRBC2, TRAC, CD2, CCL5, IL32, CD3D
      EC arterialSPARCL1, SOX17, IFI27, TM4SF1, A2M, CLEC14A, GIMAP7, CRIP2, CLDN5, PECAM1
      FibroblastsBGN, DCN, MGP, SPARC, CALD1, LUM, COL6A1, IGFBP7, COL1A2, C1S
      AT1SFTA2, CEACAM6, FXYD3, CAV1, TSPAN13, KRT7, ADIRF, HOPX, AGER, EMP2
      Multiciliated lineageSNTN, FAM229B, TMEM231, C5orf49, C12orf75, GSTA1, C11orf97, RP11-356K23.1, CD24, RP11-295M3.4
      B cell lineageTSC22D3, ISG20, IGHA1, CORO1A, IGKC, IGLC2, LTB, CD79A, CD37, MS4A1
      SecretoryKRT19, CEACAM6, WFDC2, TACSTD2, CXCL17, BPIFB1, MUC1, CP, KRT7, PIGR
      SM activated stress responseC11orf96, HES4, PLAC9, FLNA, KANK2, TPM2, PLN, SELM, GPX3, LBH
      MonocytesFCER1G, S100A9, S100A12, VCAN, COTL1, S100A8, CD14, LST1, FCN1, AIF1
      Submucosal SecretoryCCL28, PIP, ZG16B, PIGR, SEC11C, MARCKSL1, SELM, LTF, TCN1, AZGP1
      EC capillaryIFI27, TM4SF1, CLEC14A, CDH5, PECAM1, HYAL2, SPARCL1, EGFL7, CLDN5, AQP1
      Lymphatic EC maturePPFIBP1, GNG11, RAMP2, CCL21, MMRN1, IGFBP7, SDPR, TM4SF1, CLDN5, ECSCR
      RareFOXI1, HEPACAM2, ATP6V1A, EPCAM, KRT7, TMEM61, ASCL3, CLCNKB, SEC11C, CD24
      Lymphatic EC differentiatingAKAP12, TFF3, SDPR, CLDN5, TCF4, TFPI, TIMP3, GNG11, CCL21, IGFBP7
      Dendritic cellsCORO1A, MS4A6A, ITGB2, GPR183, HLA-DRB1, HLA-DPB1, HLA-DPA1, HLA-DQB1, HLA-DQA1, HLA-DMA
      MyofibroblastsCALD1, CYR61, TAGLN, MT1X, PRELP, TPM2, GPX3, CTGF, IGFBP5, SPARCL1
      Mast cellsVWA5A, RGS13, C1orf186, HPGDS, CPA3, GATA2, MS4A2, KIT, TPSAB1, TPSB2
      FibromyocytesNEXN, ACTG2, LMOD1, IGFBP7, PPP1R14A, DES, FLNA, TPM2, PLN, SELM
      Lymphatic EC proliferatingS100A16, TUBB, HMGN2, COX20, LSM2, HMGN1, ARPC1A, ECSCR, EID1, MARCKS
      ann_level_4
      LabelMarkers
      Alveolar macrophagesHLA-DPB1, HLA-DPA1, CTSZ, ACP5, COTL1, FCER1G, C1QC, LAPTM5, CTSS, HLA-DQA1
      NK cellsGZMA, CD7, CCL4, CST7, NKG7, GNLY, CTSW, CCL5, GZMB, PRF1
      SuprabasalPRDX2, KRT19, SFN, TACSTD2, KRT5, LDHB, KRT17, KLK11, S100A2, SERPINB4
      Basal restingCYR61, PERP, IGFBP2, KRT19, KRT5, KRT17, KRT15, S100A2, LAMB3, BCAM
      EC venous pulmonaryVWF, MGP, GNG11, RAMP2, SPARCL1, IGFBP7, IFI27, CLDN5, ACKR1, AQP1
      CD8 T cellsCD8A, CD3E, CCL4, CD2, CXCR4, GZMA, NKG7, IL32, CD3D, CCL5
      Peribronchial fibroblastsIGFBP7, COL1A2, COL3A1, A2M, BGN, DCN, MGP, LUM, MFAP4, C1S
      CD4 T cellsCORO1A, KLRB1, CD3E, LTB, CXCR4, IL7R, TRAC, IL32, CD2, CD3D
      MulticiliatedSNTN, FAM229B, TMEM231, C5orf49, C12orf75, GSTA1, C11orf97, RP11-356K23.1, CD24, RP11-295M3.4
      Plasma cellsITM2C, TNFRSF17, FKBP11, IGKC, IGHA1, IGHG1, CD79A, JCHAIN, MZB1, ISG20
      GobletPI3, TSPAN8, LCN2, MSMB, C3, MUC5AC, CYP2F1, PIGR, CEACAM6, BPIFB1
      ClubLCN2, ELF3, KLK11, AKR1C1, CXCL17, KRT7, CYP2F1, GSTA1, TSPAN8, PIGR
      Classical monocytesLST1, IL1B, LYZ, COTL1, S100A9, VCAN, S100A8, S100A12, AIF1, FCN1
      Interstitial macrophagesLYZ, CD163, TYROBP, LGALS1, CD68, CTSL, EMP3, AIF1, FCER1G, LAPTM5
      SMG serousCCL28, PART1, PIP, S100A1, AZGP1, PIGR, NDRG2, C6orf58, PRB3, RP11-1143G9.4
      EC venous systemicVWF, MGP, GNG11, PLVAP, RAMP2, SPARCL1, IGFBP7, A2M, CLEC14A, ACKR1
      Non classical monocytesPSAP, FCGR3A, FCN1, CORO1A, COTL1, FCER1G, LAPTM5, CTSS, AIF1, LST1
      EC general capillaryEPAS1, GNG11, IFI27, TM4SF1, EGFL7, AQP1, VWF, FCN3, SPARCL1, CLDN5
      Adventitial fibroblastsCOL6A2, SFRP2, IGFBP7, IGFBP6, COL3A1, C1S, MMP2, MGP, SPARC, COL1A2
      EC aerocyte capillaryEMCN, HPGD, IFI27, CA4, EGFL7, AQP1, IL1RL1, SPARCL1, SDPR, CLDN5
      Alveolar fibroblastsLUM, COL6A1, CYR61, C1R, COL1A2, MFAP4, A2M, C1S, ADH1B, GPX3
      NeuroendocrineUCHL1, TFF3, APOA1BP, CLDN3, SEC11C, NGFRAP1, SCG5, HIGD1A, PHGR1, CD24
      DC2ITGB2, LAPTM5, HLA-DRB1, HLA-DPB1, HLA-DPA1, HLA-DMB, HLA-DQB1, HLA-DQA1, HLA-DMA, LST1
      Transitional Club AT2CXCL17, C16orf89, RNASE1, KRT7, SCGB1A1, PIGR, SCGB3A2, KLK11, SFTA1P, FOLR1
      DC1HLA-DPA1, CPNE3, CORO1A, CPVL, C1orf54, WDFY4, LSP1, HLA-DQB1, HLA-DQA1, HLA-DMA
      B cellsCD69, CORO1A, LIMD2, BANK1, LAPTM5, CXCR4, LTB, CD79A, CD37, MS4A1
      SMG mucousFKBP11, TCN1, GOLM1, TFF3, PIGR, KLK11, MARCKSL1, CRACR2B, SELM, MSMB
      AT2 proliferatingCDK1, LSM3, CKS1B, EIF1AX, UBE2C, MRPL14, PRC1, CENPW, EMP2, DHFR
      PericytesMYL9, SPARC, SPARCL1, IGFBP7, COL4A1, GPX3, PDGFRB, CALD1, COX4I2, TPM2
      SMG ductPIP, ZG16B, PIGR, SAA1, MARCKSL1, ALDH1A3, SELM, LTF, RARRES1, AZGP1
      IonocyteFOXI1, ATP6V1A, GOLM1, TMEM61, SEC11C, SCNN1B, ASCL3, CLCNKB, HEPACAM2, CD24
      DeuterosomalRSPH9, PIFO, RUVBL2, C11orf88, FAM183A, MORN2, SAXO2, CFAP126, FAM229B, C5orf49
      TuftMUC20, KHDRBS1, ZNF428, BIK, CRYM, LRMP, HES6, KIT, AZGP1, RASSF6
      Plasmacytoid DCsIL3RA, TCF4, LTB, GZMB, JCHAIN, ITM2C, IRF8, PLD4, IRF7, C12orf75
      T cells proliferatingTRAC, HMGN2, IL32, CORO1A, ARHGDIB, STMN1, RAC2, IL2RG, HMGB2, CD3D
      Subpleural fibroblastsSERPING1, C1R, COL1A2, NNMT, COL3A1, MT1E, MT1X, PLA2G2A, SELM, MT1M
      Migratory DCsIL2RG, HLA-DRB5, TMEM176A, BIRC3, TYMP, CCL22, SYNGR2, CD83, LSP1, HLA-DQA1
      ann_level_5
      LabelMarkers
      Alveolar Mφ CCL3+MCEMP1, UPP1, HLA-DQA1, C5AR1, HLA-DMA, AIF1, LST1, LINC01272, MRC1, CCL18
      Multiciliated (non-nasal)SNTN, FAM229B, TMEM231, C5orf49, C12orf75, GSTA1, C11orf97, RP11-356K23.1, CD24, RP11-295M3.4
      Goblet (nasal)KRT7, MUC1, MUC5AC, MSMB, CP, LMO7, LCN2, CEACAM6, BPIFB1, PIGR
      Club (nasal)ELF3, C19orf33, KRT8, KRT19, TACSTD2, MUC1, S100A14, CXCL17, PSCA, FAM3D
      Monocyte derived MφLYZ, ACP5, TYROBP, LGALS1, CD68, AIF1, CTSL, EMP3, FCER1G, LAPTM5
      Alveolar Mφ proliferatingH2AFV, STMN1, LSM4, GYPC, PTTG1, KIAA0101, FABP4, CKS1B, UBE2C, HMGN2
      Club (non-nasal)SCGB3A1, CYP2F1, GSTA1, HES4, TSPAN8, TFF3, MSMB, BPIFB1, SCGB1A1, PIGR
      SMG serous (bronchial)AZGP1, ZG16B, PIGR, NDRG2, LPO, C6orf58, DMBT1, PRB3, FAM3D, RP11-1143G9.4
      Multiciliated (nasal)RP11-356K23.1, EFHC1, CAPS, ROPN1L, RSPH1, C9orf116, TMEM190, DNALI1, PIFO, ODF3B
      Goblet (bronchial)MUC5AC, MSMB, PI3, MDK, ANKRD36C, TFF3, PIGR, SAA1, CP, BPIFB1
      Interstitial Mφ perivascularMRC1, RNASE1, FGL2, RNASE6, HLA-DPA1, GPR183, CD14, HLA-DPB1, MS4A6A, AIF1
      Goblet (subsegmental)MDK, MUC5B, SCGB1A1, CP, C3, TSPAN8, TFF3, MSMB, PIGR, BPIFB1
      SMG serous (nasal)ZG16B, MUC7, C6orf58, PRB3, LTF, LYZ, PRR4, AZGP1, PIGR, RP11-1143G9.4
      Alveolar Mφ MT-positiveGSTO1, LGALS1, CTSZ, MT2A, APOC1, CTSL, UPP1, CCL18, FABP4, MT1X
      ann_finest_level
      LabelMarkers
      Alveolar macrophagesMS4A7, C1QA, HLA-DQB1, HLA-DMA, HLA-DPB1, HLA-DPA1, ACP5, C1QC, CTSS, HLA-DQA1
      NK cellsGZMA, CD7, CCL4, CST7, NKG7, GNLY, CTSW, CCL5, GZMB, PRF1
      AT2SEPP1, PGC, NAPSA, SFTPD, SLC34A2, CYB5A, MUC1, S100A14, SFTA2, SFTA3
      Alveolar Mφ CCL3+MCEMP1, UPP1, HLA-DQA1, C5AR1, HLA-DMA, AIF1, LST1, LINC01272, MRC1, CCL18
      SuprabasalPRDX2, KRT19, SFN, TACSTD2, KRT5, LDHB, KRT17, KLK11, S100A2, SERPINB4
      Basal restingCYR61, PERP, IGFBP2, KRT19, KRT5, KRT17, KRT15, S100A2, LAMB3, BCAM
      EC venous pulmonaryVWF, MGP, GNG11, RAMP2, SPARCL1, IGFBP7, IFI27, CLDN5, ACKR1, AQP1
      CD8 T cellsCD8A, CD3E, CCL4, CD2, CXCR4, GZMA, NKG7, IL32, CD3D, CCL5
      EC arterialSPARCL1, SOX17, IFI27, TM4SF1, A2M, CLEC14A, GIMAP7, CRIP2, CLDN5, PECAM1
      Peribronchial fibroblastsIGFBP7, COL1A2, COL3A1, A2M, BGN, DCN, MGP, LUM, MFAP4, C1S
      CD4 T cellsCORO1A, KLRB1, CD3E, LTB, CXCR4, IL7R, TRAC, IL32, CD2, CD3D
      AT1SFTA2, CEACAM6, FXYD3, CAV1, TSPAN13, KRT7, ADIRF, HOPX, AGER, EMP2
      Multiciliated (non-nasal)SNTN, FAM229B, TMEM231, C5orf49, C12orf75, GSTA1, C11orf97, RP11-356K23.1, CD24, RP11-295M3.4
      Plasma cellsITM2C, TNFRSF17, FKBP11, IGKC, IGHA1, IGHG1, CD79A, JCHAIN, MZB1, ISG20
      Goblet (nasal)KRT7, MUC1, MUC5AC, MSMB, CP, LMO7, LCN2, CEACAM6, BPIFB1, PIGR
      Club (nasal)ELF3, C19orf33, KRT8, KRT19, TACSTD2, MUC1, S100A14, CXCL17, PSCA, FAM3D
      SM activated stress responseC11orf96, HES4, PLAC9, FLNA, KANK2, TPM2, PLN, SELM, GPX3, LBH
      Classical monocytesLST1, IL1B, LYZ, COTL1, S100A9, VCAN, S100A8, S100A12, AIF1, FCN1
      Monocyte derived MφLYZ, ACP5, TYROBP, LGALS1, CD68, AIF1, CTSL, EMP3, FCER1G, LAPTM5
      Alveolar Mφ proliferatingH2AFV, STMN1, LSM4, GYPC, PTTG1, KIAA0101, FABP4, CKS1B, UBE2C, HMGN2
      Club (non-nasal)SCGB3A1, CYP2F1, GSTA1, HES4, TSPAN8, TFF3, MSMB, BPIFB1, SCGB1A1, PIGR
      SMG serous (bronchial)AZGP1, ZG16B, PIGR, NDRG2, LPO, C6orf58, DMBT1, PRB3, FAM3D, RP11-1143G9.4
      EC venous systemicVWF, MGP, GNG11, PLVAP, RAMP2, SPARCL1, IGFBP7, A2M, CLEC14A, ACKR1
      Non classical monocytesPSAP, FCGR3A, FCN1, CORO1A, COTL1, FCER1G, LAPTM5, CTSS, AIF1, LST1
      EC general capillaryEPAS1, GNG11, IFI27, TM4SF1, EGFL7, AQP1, VWF, FCN3, SPARCL1, CLDN5
      Adventitial fibroblastsCOL6A2, SFRP2, IGFBP7, IGFBP6, COL3A1, C1S, MMP2, MGP, SPARC, COL1A2
      Lymphatic EC maturePPFIBP1, GNG11, RAMP2, CCL21, MMRN1, IGFBP7, SDPR, TM4SF1, CLDN5, ECSCR
      EC aerocyte capillaryEMCN, HPGD, IFI27, CA4, EGFL7, AQP1, IL1RL1, SPARCL1, SDPR, CLDN5
      Smooth musclePRKCDBP, NDUFA4L2, MYL9, ACTA2, MGP, CALD1, TPM1, TAGLN, IGFBP7, TPM2
      Alveolar fibroblastsLUM, COL6A1, CYR61, C1R, COL1A2, MFAP4, A2M, C1S, ADH1B, GPX3
      Multiciliated (nasal)RP11-356K23.1, EFHC1, CAPS, ROPN1L, RSPH1, C9orf116, TMEM190, DNALI1, PIFO, ODF3B
      Goblet (bronchial)MUC5AC, MSMB, PI3, MDK, ANKRD36C, TFF3, PIGR, SAA1, CP, BPIFB1
      NeuroendocrineUCHL1, TFF3, APOA1BP, CLDN3, SEC11C, NGFRAP1, SCG5, HIGD1A, PHGR1, CD24
      Lymphatic EC differentiatingAKAP12, TFF3, SDPR, CLDN5, TCF4, TFPI, TIMP3, GNG11, CCL21, IGFBP7
      DC2ITGB2, LAPTM5, HLA-DRB1, HLA-DPB1, HLA-DPA1, HLA-DMB, HLA-DQB1, HLA-DQA1, HLA-DMA, LST1
      Transitional Club AT2CXCL17, C16orf89, RNASE1, KRT7, SCGB1A1, PIGR, SCGB3A2, KLK11, SFTA1P, FOLR1
      DC1HLA-DPA1, CPNE3, CORO1A, CPVL, C1orf54, WDFY4, LSP1, HLA-DQB1, HLA-DQA1, HLA-DMA
      MyofibroblastsCALD1, CYR61, TAGLN, MT1X, PRELP, TPM2, GPX3, CTGF, IGFBP5, SPARCL1
      B cellsCD69, CORO1A, LIMD2, BANK1, LAPTM5, CXCR4, LTB, CD79A, CD37, MS4A1
      Mast cellsVWA5A, RGS13, C1orf186, HPGDS, CPA3, GATA2, MS4A2, KIT, TPSAB1, TPSB2
      Interstitial Mφ perivascularMRC1, RNASE1, FGL2, RNASE6, HLA-DPA1, GPR183, CD14, HLA-DPB1, MS4A6A, AIF1
      SMG mucousFKBP11, TCN1, GOLM1, TFF3, PIGR, KLK11, MARCKSL1, CRACR2B, SELM, MSMB
      AT2 proliferatingCDK1, LSM3, CKS1B, EIF1AX, UBE2C, MRPL14, PRC1, CENPW, EMP2, DHFR
      Goblet (subsegmental)MDK, MUC5B, SCGB1A1, CP, C3, TSPAN8, TFF3, MSMB, PIGR, BPIFB1
      PericytesMYL9, SPARC, SPARCL1, IGFBP7, COL4A1, GPX3, PDGFRB, CALD1, COX4I2, TPM2
      SMG ductPIP, ZG16B, PIGR, SAA1, MARCKSL1, ALDH1A3, SELM, LTF, RARRES1, AZGP1
      MesotheliumCEBPD, LINC01133, MRPL33, UPK3B, CFB, SEPP1, EID1, HP, CUX1, MRPS21
      SMG serous (nasal)ZG16B, MUC7, C6orf58, PRB3, LTF, LYZ, PRR4, AZGP1, PIGR, RP11-1143G9.4
      IonocyteFOXI1, ATP6V1A, GOLM1, TMEM61, SEC11C, SCNN1B, ASCL3, CLCNKB, HEPACAM2, CD24
      Alveolar Mφ MT-positiveGSTO1, LGALS1, CTSZ, MT2A, APOC1, CTSL, UPP1, CCL18, FABP4, MT1X
      FibromyocytesNEXN, ACTG2, LMOD1, IGFBP7, PPP1R14A, DES, FLNA, TPM2, PLN, SELM
      DeuterosomalRSPH9, PIFO, RUVBL2, C11orf88, FAM183A, MORN2, SAXO2, CFAP126, FAM229B, C5orf49
      TuftMUC20, KHDRBS1, ZNF428, BIK, CRYM, LRMP, HES6, KIT, AZGP1, RASSF6
      Plasmacytoid DCsIL3RA, TCF4, LTB, GZMB, JCHAIN, ITM2C, IRF8, PLD4, IRF7, C12orf75
      T cells proliferatingTRAC, HMGN2, IL32, CORO1A, ARHGDIB, STMN1, RAC2, IL2RG, HMGB2, CD3D
      Subpleural fibroblastsSERPING1, C1R, COL1A2, NNMT, COL3A1, MT1E, MT1X, PLA2G2A, SELM, MT1M
      Lymphatic EC proliferatingS100A16, TUBB, HMGN2, COX20, LSM2, HMGN1, ARPC1A, ECSCR, EID1, MARCKS
      Migratory DCsIL2RG, HLA-DRB5, TMEM176A, BIRC3, TYMP, CCL22, SYNGR2, CD83, LSP1, HLA-DQA1