Human Bone Marrow Reference Explorer

Annotation Markers

celltype.l2
LabelLabelOBO Ontology IDMarkers
ASDCAXL+ Dendritic Celldendritic cellAXL,SCT,LILRA4,PPP1R14A,TGFBI,UPK3A,SCN9A,CLEC10A,PROC,PLD4
BaEoMaBasophil Eosinophil Mast Progenitorbasophil mast progenitor cellHDC,MS4A2,TPSAB1,TPSB2,CLC,CPA3,MS4A3,IL1RL1,PRG2,HPGDS
CD14 MonoCD14 MonocyteCD14-positive monocyteFOLR3,CLEC4E,MCEMP1,RBP7,CDA,FPR1,CD300E,C5AR1,CD93,APOBEC3A
CD16 MonoCD16 MonocyteCD14-low, CD16-positive monocyteLYPD2,VMO1,TPPP3,C1QA,C5AR1,CD300E,GPBAR1,LILRA1,HES4,APOBEC3A
CD4 EffectorCD4 Effectoreffector CD4-positive, alpha-beta T cellTNFRSF4,AQP3,TNFRSF25,MAL,IL7R,TRAT1,RORA,FLT3LG,KLRB1,CD6
CD4 MemoryCD4 MemoryCD4-positive, alpha-beta memory T cellMAL,TRAT1,AP3M2,CAMK4,AQP3,IL7R,RCAN3,BCL11B,LEF1,FLT3LG
CD4 NaiveCD4 Naivenaive thymus-derived CD4-positive, alpha-beta T cellTSHZ2,MAL,CCR7,CAMK4,LEF1,BCL11B,FHIT,RCAN3,SH3YL1,PIK3IP1
CD8 Effector 1CD8 Effector 1effector CD8-positive, alpha-beta T cellCRTAM,IFNG,CD8A,XCL1,GZMK,TIGIT,CCL4L2,CD8B,CD160,XCL2
CD8 Effector 2CD8 Effector 2effector CD8-positive, alpha-beta T cellZNF683,PRSS23,KLRC2,FCRL6,S1PR5,GZMH,FGFBP2,PATL2,TRGC2,CD3G
CD8 Effector 3CD8 Effector 3effector CD8-positive, alpha-beta T cellGZMK,CD160,CD8A,KLRB1,LAG3,CCL4,XCL2,GZMM,XCL1,CCL3
CD8 MemoryCD8 MemoryCD8-positive, alpha-beta memory T cellCD8B,CD8A,GZMK,IL7R,BCL11B,CD3E,PIK3IP1,CD6,TRAC,SPOCK2
CD8 NaiveCD8 Naivenaive thymus-derive CD8-positive, alpha-beta T cellNELL2,CD8B,S100B,TRABD2A,CCR7,OXNAD1,FLT3LG,MAL,LEF1,CAMK4
cDC1Conventional Dendritic Cell 1CD141-positive myeloid dendritic cellIDO1,XCR1,TACSTD2,CLEC9A,WFDC21P,CLNK,CADM1,DNASE1L3,BATF3,LGALS2
cDC2Conventional Dendritic Cell 2CD1c-positive myeloid dendritic cellENHO,CLEC10A,CD1C,IL13RA1,PLBD1,LGALS2,CD33,IGSF6,IFI30,FCER1A
CLPCommon Lymphoid Progenitorcommon lymphoid progenitorACY3,PRSS2,C1QTNF4,SPINK2,SMIM24,NREP,CD34,DNTT,FLT3,SPNS3
Early ErythEarly Erythroiderythroid lineage cellCNRIP1,GATA2,ITGA2B,TFR2,GATA1,KLF1,CYTL1,MAP7,FSCN1,APOC1
EMPErythroid Megakaryocyte Progenitormegakaryocyte-erythroid progenitor cellMYCT1,CRHBP,NPR3,AVP,GATA2,HPGDS,CYTL1,CRYGD,IGSF10,PBX1
GMPGranulocyte Monocyte Progenitorgranulocyte monocyte progenitor cellSERPINB10,RNASE3,MS4A3,PRTN3,ELANE,AZU1,CTSG,RNASE2,RETN,NPW
HSCHematopoeitic Stem Cellhematopoeitic stem cellCRHBP,AVP,MYCT1,BEX1,NPR3,CRYGD,MSRB3,CD34,NPDC1,MLLT3
ILCInnate Lymphoid Cellmature natural killer cellLDB2,CD160,XCL2,KLRB1,XCL1,KLRF1,KLRD1,KLRC1,TRDC,GZMM
Late ErythLate Erythroiderythroid lineage cellCTSE,TSPO2,IFIT1B,TMEM56,RHCE,RHAG,SPTA1,ADD2,EPCAM,HBG1
LMPPLymphoid Primed Multipotent Progenitorhematopoeitic multipotent progenitor cellAVP,CRHBP,C1QTNF4,BEX1,NPR3,CD34,NPW,SMIM24,CSF3R,NPDC1
MacrophageMacrophagemacrophageSPIC,FABP3,CD5L,CCL18,C1QC,C1QB,FABP4,C1QA,APOE,SELENOP
MAITMucosal associated invariant Tmucosal invariant T cellKLRB1,IL7R,TNFRSF25,SPOCK2,RORA,NCR3,GZMK,KLRG1,TRGC2,CD6
Memory BMemory Bmemory B cellFCRL2,TNFRSF13B,ARHGAP24,PNOC,FCER2,FCRLA,BLK,HLA-DOB,MS4A1,TNFRSF13C
Naive BNaive Bnaive B cellFCRL2,FCRL1,ARHGAP24,FCRL5,FCER2,FCRLA,PAX5,CD19,HLA-DOB,CD22
NKNatural KillerCD16-positive, CD56-dim natural killer cell, humanSH2D1B,PRSS23,S1PR5,LAIR2,KLRC1,PTGDR,FGFBP2,FCRL6,TBX21,KLRC2
NK CD56+Natural Killer CD56+CD16-negative, CD56-bright natural killer cell, humanSPTSSB,NCAM1,KLRC1,XCL1,IL18RAP,XCL2,IL2RB,KLRF1,TNFRSF18,KLRD1
NK ProliferatingProliferating Natural Killermature natural killer cellGZMA,GZMB,TRDC,PRF1,TYMS,FGFBP2,KLRF1,CD247,GZMH,CCL4
pDCPlasmacytoid Dendritic Cellplasmacytoid dendritic cellASIP,CLEC4C,SCAMP5,PROC,PTCRA,SCT,SHD,PPM1J,LILRA4,LRRC26
PlasmaPlasmaplasma cellSDC1,IGLC6,IGLV6-57,TNFRSF17,IGLV3-1,TNFRSF13B,IGLC7,JSRP1,FCRL5,IGKV1-5
PlateletPlateletplateletRGS18,C2orf88,TMEM40,GP9,PF4,PPBP,DAB2,SPARC,RUFY1,F13A1
pre BPrecursor Bprecursor B cellNPY,LCN6,RAG2,HMHB1,ARPP21,AKAP12,RAG1,C10orf10,CYGB,SLC8A1-AS1
pre-mDCPrecursor Myeloid Dendritic Dellcommon dendritic progenitorENHO,CLEC10A,RNASE2,PLBD1,FCER1A,IGSF6,MNDA,SAMHD1,ALDH2,PAK1
pre-pDCPrecursor Plasmacytoid Dendritic Cellimmature CD11c-negative plasmacytoid dendritic cellSCT,SHD,LILRA4,LILRB4,PTPRS,TNNI2,PLD4,SPIB,IRF8,TNFRSF21
pro BProgenitor Bpro-B cellCYGB,UMODL1,EBF1,MME,VPREB1,DNTT,IGLL1,UHRF1,BLNK,AGPS
Prog MkProgenitor Megakaryocytemegakaryocyte progenitor cellCLEC1B,SPX,WFDC1,ANXA3,CMTM5,SELP,RBPMS2,ARHGAP6,GP9,LTBP1
StromalStromalstromal cellIGFBP5,CP,TF,DCN,LUM,COL1A2,CRH,TNC,SPARCL1,BMP5
T proliferatingProliferating TT cellRRM2,MKI67,BIRC5,LCK,SH2D1A,CLSPN,CDT1,TK1,TOP2A,TRAC
transitional BTransitional Btransitional stage B cellBMP3,CFAP73,ARPP21,IGLC5,APBB2,HRK,DTX1,AKAP12,IGLC6,MME
celltype.l1
LabelExpanded LabelOBO Ontology IDMarkers
BBlymphocyte of B lineageFCRL1,FCRL2,CD22,ARHGAP24,BANK1,MS4A1,RALGPS2,CD37,SWAP70,CD79A
CD4 TCD4 TCD4-positive, alpha-beta T cellMAL,LEF1,IL7R,TCF7,LTB,LEPROTL1,CD3E,CD3D,CD3G,CD27
CD8 TCD8 TCD8-positive, alpha-beta T cellCD8B,CD8A,NELL2,CD3D,CD3E,S100B,GZMH,CD3G,TRGC2,CCL5
DCDendritic Celldendritic cellCLEC4C,PROC,SCT,SCN9A,SHD,PPM1J,ENHO,CLEC10A,LILRA4,DNASE1L3
HSPCHematopoeitic stem and progenitor cellhematopoietic precursor cellARPP21,CFAP73,AVP,SPTA1,EPCAM,RHCE,AKAP12,RHAG,C1QTNF4,CYTL1
MonoMonocytemonocyteLYPD2,FOLR3,CLEC4E,LILRA1,CDA,RBP7,CD300LF,FPR1,CD93,MTMR11
NKNatural Killermature NK cellNCR1,SH2D1B,KLRC1,PRSS23,CD160,B3GNT7,IL2RB,IL18RAP,XCL1,KLRF1
Other TOther TT cellSLC4A10,KLRB1,IL7R,TNFRSF25,RORA,SPOCK2,MAF,GZMK,ZFP36L2,LYAR